If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ), 'gf_id' => 'HOM05D000942', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000942' ), 'data_identifier' => 'HOM05D000942', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000942', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '637', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07990' => 'bna', 'A02p08600' => 'bna', 'A03p12890' => 'bna', 'A03p23400' => 'bna', 'A03p59510' => 'bna', 'A05p02500' => 'bna', 'A05p15560' => 'bna', 'A08p19390' => 'bna', 'A09p50300' => 'bna', 'A09p51900' => 'bna', 'A10p14740' => 'bna', 'Aa31LG10G12250' => 'aar', 'Aa31LG1G23750' => 'aar', 'Aa31LG2G20390' => 'aar', 'Aa31LG3G13190' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.123' => 'aag', 'Actinidia01301' => 'ach', 'Actinidia01302' => 'ach', 'Actinidia09326' => 'ach', 'Actinidia17235' => 'ach', 'Actinidia17448' => 'ach', 'Actinidia17449' => 'ach', 'Actinidia25158' => 'ach', 'Actinidia25212' => 'ach', 'Actinidia25213' => 'ach', 'Actinidia25214' => 'ach', 'Actinidia37174' => 'ach', 'Actinidia37175' => 'ach', 'Actinidia37178' => 'ach', 'Actinidia37179' => 'ach', 'Actinidia37180' => 'ach', 'Actinidia38545' => 'ach', 'Actinidia39223' => 'ach', 'Ah.00g238110' => 'amhyb', 'Ah.04g151610' => 'amhyb', 'Ah.08g221120' => 'amhyb', 'Ah.09g230220' => 'amhyb', 'Ah.13g076480' => 'amhyb', 'Ah.14g083670' => 'amhyb', 'Ah.16g109920' => 'amhyb', 'AL2G19030' => 'aly', 'AL4G24630' => 'aly', 'AL4G40050' => 'aly', 'AL5G21200' => 'aly', 'AL5G38940' => 'aly', 'AL6G40830' => 'aly', 'AL6G40890' => 'aly', 'AL7G22030' => 'aly', 'AL8G33280' => 'aly', 'Aqoxy2G00140' => 'aox', 'Aqoxy4G02606' => 'aox', 'Aqoxy7G02999' => 'aox', 'arahy.Tifrunner.gnm1.ann1.38CFQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4Z5MSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7T1A8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PNC89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CU2YZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DTP448' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9CV5S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA7QKA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IFTQ93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJF32N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KJI0IH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PQ9JDQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QS4CJG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S1YAK4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY4M5M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UTI8LW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VA6W93' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBU6U3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X0AFQ9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y87FJV' => 'arhy', 'AT2G29890' => 'ath', 'AT2G41740' => 'ath', 'AT3G57410' => 'ath', 'AT4G30160' => 'ath', 'AT5G57320' => 'ath', 'ATR0580G214' => 'atr', 'ATR0618G152' => 'atr', 'ATR0626G392' => 'atr', 'Atru.chr1.1107' => 'acertr', 'Atru.chr3.4231' => 'acertr', 'Atru.chr7.411' => 'acertr', 'Atru.chr7.831' => 'acertr', 'AUR62001656' => 'cqu', 'AUR62020121' => 'cqu', 'AUR62021324' => 'cqu', 'AUR62024454' => 'cqu', 'AUR62026043' => 'cqu', 'AUR62033241' => 'cqu', 'BcaB01g04463' => 'bca', 'BcaB02g10281' => 'bca', 'BcaB03g12634' => 'bca', 'BcaB05g22336' => 'bca', 'BcaB05g23730' => 'bca', 'BcaB05g23731' => 'bca', 'BcaB08g36091' => 'bca', 'BcaC01g00054' => 'bca', 'BcaC01g06498' => 'bca', 'BcaC02g10266' => 'bca', 'BcaC02g11062' => 'bca', 'BcaC03g14164' => 'bca', 'BcaC04g19979' => 'bca', 'BcaC08g44347' => 'bca', 'BcaC09g51796' => 'bca', 'BcaNung00520' => 'bca', 'BcaNung02833' => 'bca', 'BcaNung04416' => 'bca', 'BolC1t00882H' => 'bol', 'BolC2t07561H' => 'bol', 'BolC3t13946H' => 'bol', 'BolC3t15164H' => 'bol', 'BolC3t21197H' => 'bol', 'BolC4t21936H' => 'bol', 'BolC4t23627H' => 'bol', 'BolC7t46219H' => 'bol', 'BolC8t50894H' => 'bol', 'BolC9t57764H' => 'bol', 'BraA01t00744Z' => 'bra', 'BraA02t05929Z' => 'bra', 'BraA03t10597Z' => 'bra', 'BraA03t11557Z' => 'bra', 'BraA03t15006Z' => 'bra', 'BraA05t19243Z' => 'bra', 'BraA05t20472Z' => 'bra', 'BraA08t33900Z' => 'bra', 'BraA09t40481Z' => 'bra', 'BraA09t40626Z' => 'bra', 'BraA10t43557Z' => 'bra', 'C01p08900' => 'bna', 'C02p14360' => 'bna', 'C02p14370' => 'bna', 'C03p15040' => 'bna', 'C03p27920' => 'bna', 'C03p88850' => 'bna', 'C04p02960' => 'bna', 'C04p21020' => 'bna', 'C04p30920' => 'bna', 'C04p30930' => 'bna', 'C06p17860' => 'bna', 'C07p57520' => 'bna', 'C08p32830' => 'bna', 'C09p49150' => 'bna', 'CAN.G2225.1' => 'can', 'CAN.G2225.2' => 'can', 'CAN.G641.20' => 'can', 'CAN.G676.34' => 'can', 'CANSAT11G1733' => 'cansat', 'CANSAT11G1983' => 'cansat', 'CANSAT54G0521' => 'cansat', 'CANSAT80G0062' => 'cansat', 'CARHR123120' => 'chi', 'CARHR136830' => 'chi', 'CARHR167610' => 'chi', 'CARHR238060' => 'chi', 'CARHR271110' => 'chi', 'Carub.0004s1098' => 'cru', 'Carub.0004s2402' => 'cru', 'Carub.0005s0268' => 'cru', 'Carub.0005s2425' => 'cru', 'Carub.0007s1045' => 'cru', 'Carub.0008s1783' => 'cru', 'Ca_02040_v3' => 'car', 'Ca_07731_v3' => 'car', 'Ca_08451_v3' => 'car', 'Ca_08454_v3' => 'car', 'Ca_14925_v3' => 'car', 'Ca_21243_v3' => 'car', 'Ca_28219_v3' => 'car', 'CBR_g17788' => 'cbr', 'Cc00_g20480' => 'ccan', 'Cc00_g21740' => 'ccan', 'Cc01_g02640' => 'ccan', 'Cc01_g14120' => 'ccan', 'Cc05_g09610' => 'ccan', 'Cc06_g12820' => 'ccan', 'Cc06_g17590' => 'ccan', 'Cc10_g09830' => 'ccan', 'Cc10_g11050' => 'ccan', 'CDE02G4456' => 'cde', 'CDE03G0142' => 'cde', 'CDE04G0630' => 'cde', 'CDE04G1086' => 'cde', 'CDE04G3185' => 'cde', 'CDE04G3580' => 'cde', 'Cfa016811' => 'cfa', 'Ciclev10006928m.g' => 'ccl', 'Ciclev10007360m.g' => 'ccl', 'Ciclev10027779m.g' => 'ccl', 'CiPaw.07G194800' => 'cil', 'CiPaw.08G034600' => 'cil', 'CiPaw.09G038600' => 'cil', 'CiPaw.10G033500' => 'cil', 'CiPaw.13G078600' => 'cil', 'ClCG02G019600' => 'cla', 'ClCG04G000160' => 'cla', 'ClCG06G013500' => 'cla', 'ClCG10G017080' => 'cla', 'ClCG11G011940' => 'cla', 'COL.COLO4_19145' => 'col', 'COL.COLO4_24430' => 'col', 'COL.COLO4_28293' => 'col', 'Cpa.g.sc112.32' => 'cpa', 'Cpa.g.sc671.1' => 'cpa', 'Cpa.g.sc95.36' => 'cpa', 'Cre12.g524400' => 'cre', 'Cre12.g555550' => 'cre', 'CsaV3_1G031760' => 'csa', 'CsaV3_2G008570' => 'csa', 'CsaV3_3G039310' => 'csa', 'CsaV3_4G011660' => 'csa', 'CsaV3_6G016270' => 'csa', 'CSS0004063' => 'camsi', 'CSS0017804' => 'camsi', 'CSS0023612' => 'camsi', 'CSS0025588' => 'camsi', 'CSS0037960' => 'camsi', 'DCAR_009062' => 'dca', 'DCAR_009921' => 'dca', 'DCAR_014688' => 'dca', 'DCAR_017988' => 'dca', 'DCAR_020136' => 'dca', 'DCAR_020493' => 'dca', 'Dinv12488' => 'din', 'Dinv19565' => 'din', 'Dinv28634' => 'din', 'Dinv39610' => 'din', 'Dinv39611' => 'din', 'Dinv41214' => 'din', 'Duzib093G1174' => 'dzi', 'Duzib106G1058' => 'dzi', 'Duzib128G0162' => 'dzi', 'Duzib150G0947' => 'dzi', 'Duzib150G1554' => 'dzi', 'Duzib152G0002' => 'dzi', 'Duzib168G1629' => 'dzi', 'Duzib170G0877' => 'dzi', 'ECA234G0405' => 'eca', 'ECA236G1182' => 'eca', 'ECA236G2868' => 'eca', 'ECA247G1317' => 'eca', 'ECA247G1710' => 'eca', 'ECA247G3569' => 'eca', 'ECA247G3684' => 'eca', 'ECA248G3268' => 'eca', 'EL10Ac3g06401' => 'bvu', 'EL10Ac3g07094' => 'bvu', 'EL10Ac7g16156' => 'bvu', 'Eucgr.A02344' => 'egr', 'Eucgr.B02260' => 'egr', 'Eucgr.C00137' => 'egr', 'Eucgr.D02398' => 'egr', 'Eucgr.K01749' => 'egr', 'Eucgr.K01802' => 'egr', 'Eucgr.K01803' => 'egr', 'FAN02G3817' => 'fan', 'FAN05G5557' => 'fan', 'FAN09G3986' => 'fan', 'FAN11G3230' => 'fan', 'FAN12G3508' => 'fan', 'FAN14G0021' => 'fan', 'FAN16G1050' => 'fan', 'FAN17G1404' => 'fan', 'FAN21G1755' => 'fan', 'FAN22G2424' => 'fan', 'FAN25G0337' => 'fan', 'FvH4_3g38450' => 'fve', 'FvH4_4g07730' => 'fve', 'FvH4_6g23900' => 'fve', 'Glyma.02G184600' => 'gma', 'Glyma.03G136500' => 'gma', 'Glyma.07G179500' => 'gma', 'Glyma.08G333900' => 'gma', 'Glyma.09G057400' => 'gma', 'Glyma.10G099200' => 'gma', 'Glyma.13G098600' => 'gma', 'Glyma.15G163700' => 'gma', 'Glyma.17G061200' => 'gma', 'Glyma.18G067000' => 'gma', 'Glyma.19G138700' => 'gma', 'Glyma.20G038302' => 'gma', 'Gohir.A01G131200' => 'ghi', 'Gohir.A01G197100' => 'ghi', 'Gohir.A02G107500' => 'ghi', 'Gohir.A05G089000' => 'ghi', 'Gohir.A08G018700' => 'ghi', 'Gohir.A11G312600' => 'ghi', 'Gohir.A13G212400' => 'ghi', 'Gohir.D01G120500' => 'ghi', 'Gohir.D01G187300' => 'ghi', 'Gohir.D03G069500' => 'ghi', 'Gohir.D05G090000' => 'ghi', 'Gohir.D08G029300' => 'ghi', 'Gohir.D11G329100' => 'ghi', 'Gohir.D13G216500' => 'ghi', 'Gorai.002G147100' => 'gra', 'Gorai.002G230700' => 'gra', 'Gorai.003G091200' => 'gra', 'Gorai.004G026700' => 'gra', 'Gorai.007G360500' => 'gra', 'Gorai.009G092400' => 'gra', 'Gorai.013G246800' => 'gra', 'GSVIVG01024752001' => 'vvi', 'GSVIVG01029237001' => 'vvi', 'GSVIVG01033145001' => 'vvi', 'GSVIVG01033261001' => 'vvi', 'HanXRQChr01g0006291' => 'han', 'HanXRQChr01g0008761' => 'han', 'HanXRQChr01g0027881' => 'han', 'HanXRQChr02g0033181' => 'han', 'HanXRQChr04g0109221' => 'han', 'HanXRQChr05g0131871' => 'han', 'HanXRQChr05g0142201' => 'han', 'HanXRQChr06g0178511' => 'han', 'HanXRQChr06g0179361' => 'han', 'HanXRQChr09g0244421' => 'han', 'HanXRQChr10g0283331' => 'han', 'HanXRQChr10g0296601' => 'han', 'HanXRQChr10g0309051' => 'han', 'HanXRQChr12g0358391' => 'han', 'HanXRQChr13g0408311' => 'han', 'HanXRQChr17g0561921' => 'han', 'Haze_19851' => 'cav', 'Haze_21963' => 'cav', 'Haze_24294' => 'cav', 'Hma1.2p1_0000F.1_g000950' => 'hma', 'Hma1.2p1_0191F.1_g083300' => 'hma', 'Hma1.2p1_0235F.1_g099010' => 'hma', 'Hma1.2p1_0235F.1_g099020' => 'hma', 'Hma1.2p1_0235F.1_g099030' => 'hma', 'Hma1.2p1_1086F.1_g255490' => 'hma', 'Hma1.2p1_1086F.1_g255500' => 'hma', 'Hma1.2p1_1943F.1_g308510' => 'hma', 'Hma1.2p1_2520F.1_g323820' => 'hma', 'Hma1.2p1_2541F.1_g324160' => 'hma', 'HPP92_000144' => 'vpl', 'HPP92_000145' => 'vpl', 'HPP92_006732' => 'vpl', 'HPP92_011300' => 'vpl', 'HPP92_013456' => 'vpl', 'HPP92_013457' => 'vpl', 'HPP92_013460' => 'vpl', 'HPP92_015304' => 'vpl', 'HPP92_015333' => 'vpl', 'HPP92_018364' => 'vpl', 'Hund24706' => 'sun', 'Hund26322' => 'sun', 'Lalb_Chr01g0017321' => 'lal', 'Lalb_Chr07g0180581' => 'lal', 'Lalb_Chr13g0300091' => 'lal', 'Lalb_Chr15g0082841' => 'lal', 'Lalb_Chr15g0084061' => 'lal', 'Lalb_Chr15g0084071' => 'lal', 'Lalb_Chr18g0052501' => 'lal', 'Lalb_Chr20g0110521' => 'lal', 'Lalb_Chr20g0116371' => 'lal', 'Lalb_Chr25g0287131' => 'lal', 'Lj1g0004813' => 'lja', 'Lj2A385T27' => 'lonja', 'Lj4g0007076' => 'lja', 'Lj5C608G0' => 'lonja', 'Lj5g0005178' => 'lja', 'Lj6g0017146' => 'lja', 'Lj6g0025972' => 'lja', 'Lju124C42G5' => 'lonja', 'Lju50C12G7' => 'lonja', 'Lsat_1_v5_gn_1_13160' => 'lsa', 'Lsat_1_v5_gn_2_30380' => 'lsa', 'Lsat_1_v5_gn_3_120840' => 'lsa', 'Lsat_1_v5_gn_4_168001' => 'lsa', 'Lsat_1_v5_gn_4_21621' => 'lsa', 'Lsat_1_v5_gn_4_56700' => 'lsa', 'Lsat_1_v5_gn_4_62240' => 'lsa', 'Lsat_1_v5_gn_4_95621' => 'lsa', 'Lsat_1_v5_gn_5_161381' => 'lsa', 'Lsat_1_v5_gn_5_170560' => 'lsa', 'Lsat_1_v5_gn_5_184380' => 'lsa', 'Lsat_1_v5_gn_5_85781' => 'lsa', 'Lsat_1_v5_gn_5_86041' => 'lsa', 'Lsat_1_v5_gn_5_98460' => 'lsa', 'Lsat_1_v5_gn_6_54321' => 'lsa', 'Lsat_1_v5_gn_7_37961' => 'lsa', 'Lsat_1_v5_gn_7_88240' => 'lsa', 'Lsat_1_v5_gn_8_134881' => 'lsa', 'Lsat_1_v5_gn_8_147881' => 'lsa', 'Lsat_1_v5_gn_8_68241' => 'lsa', 'Lsat_1_v5_gn_8_81241' => 'lsa', 'Lsat_1_v5_gn_9_1361' => 'lsa', 'Lsat_1_v5_gn_9_19321' => 'lsa', 'Lsat_1_v5_gn_9_29140' => 'lsa', 'Manes.02G120200' => 'mes', 'Manes.06G021432' => 'mes', 'Manes.08G051200' => 'mes', 'Manes.09G021000' => 'mes', 'Manes.14G159021' => 'mes', 'Mapoly0061s0057' => 'mpo', 'Mapoly0156s0006' => 'mpo', 'MBI06_g22318_MAGBIO' => 'mbi', 'MBI06_g22319_MAGBIO' => 'mbi', 'MBI06_g22320_MAGBIO' => 'mbi', 'MBI08_g34222_MAGBIO' => 'mbi', 'MBI09_g19701_MAGBIO' => 'mbi', 'MBI14_g19447_MAGBIO' => 'mbi', 'MBI14_g28263_MAGBIO' => 'mbi', 'MBI16_g44476_MAGBIO' => 'mbi', 'MBI17_g05577_MAGBIO' => 'mbi', 'MCO06G184' => 'mco', 'MD03G1071900' => 'mdo', 'MD12G1074400' => 'mdo', 'MD13G1246200' => 'mdo', 'MD14G1072600' => 'mdo', 'MD16G1253700' => 'mdo', 'Medtr2g036860' => 'mtr', 'Medtr3g463530' => 'mtr', 'Medtr4g127660' => 'mtr', 'Medtr7g091460' => 'mtr', 'MELO3C004000.2' => 'cme', 'MELO3C009676.2' => 'cme', 'MELO3C017447.2' => 'cme', 'MELO3C023146.2' => 'cme', 'MELO3C025857.2' => 'cme', 'Migut.J01516' => 'egut', 'Migut.J01755' => 'egut', 'Migut.K00091' => 'egut', 'Migut.K00225' => 'egut', 'MSTRG.19859' => 'ama', 'MSTRG.26124' => 'ama', 'MSTRG.26125' => 'ama', 'MSTRG.26212' => 'ama', 'MSTRG.6247' => 'ama', 'MSTRG.6427' => 'ama', 'Nitab4.5_0000018g0130' => 'nta', 'Nitab4.5_0000018g0140' => 'nta', 'Nitab4.5_0000186g0030' => 'nta', 'Nitab4.5_0000364g0090' => 'nta', 'Nitab4.5_0000586g0070' => 'nta', 'Nitab4.5_0003307g0070' => 'nta', 'Nitab4.5_0006491g0040' => 'nta', 'Nitab4.5_0007003g0010' => 'nta', 'Nn2g11455' => 'nnu', 'Nn2g15215' => 'nnu', 'Nn7g36297' => 'nnu', 'Nn8g40423' => 'nnu', 'Oeu008163.1' => 'oeu', 'Oeu008912.2' => 'oeu', 'Oeu022439.3' => 'oeu', 'Oeu023111.3' => 'oeu', 'Oeu032542.1' => 'oeu', 'Oeu032543.1' => 'oeu', 'Oeu032544.1' => 'oeu', 'Oeu056499.1' => 'oeu', 'Os03g0356700' => 'osa', 'Os04g0604000' => 'osa', 'Os05g0153000' => 'osa', 'Os06g0659300' => 'osa', 'Os08g0240800' => 'osa', 'Peaxi162Scf00002g02720' => 'pax', 'Peaxi162Scf00109g00515' => 'pax', 'Peaxi162Scf00124g00019' => 'pax', 'Peaxi162Scf00130g00011' => 'pax', 'PGR004G2703' => 'pgr', 'PGR044G2322' => 'pgr', 'PGR102G0020' => 'pgr', 'PGR109G0002' => 'pgr', 'PGR142G0378' => 'pgr', 'PGR142G1341' => 'pgr', 'PGSC0003DMG400004491' => 'stu', 'PGSC0003DMG400008134' => 'stu', 'PGSC0003DMG400021930' => 'stu', 'PGSC0003DMG400023689' => 'stu', 'Phvul.001G131700' => 'pvu', 'Phvul.003G143200' => 'pvu', 'Phvul.006G064200' => 'pvu', 'Phvul.007G252400' => 'pvu', 'Phvul.009G238200' => 'pvu', 'Potri.006G050200' => 'ptr', 'Potri.006G165300' => 'ptr', 'Potri.009G045000' => 'ptr', 'Potri.016G056200' => 'ptr', 'Potri.018G089700' => 'ptr', 'Pp3c17_11440' => 'ppa', 'Pp3c18_7160' => 'ppa', 'Pp3c19_16000' => 'ppa', 'Pp3c22_17160' => 'ppa', 'PRCOL_00004165' => 'pco', 'Prupe.1G081400' => 'ppe', 'Prupe.6G058500' => 'ppe', 'Prupe.7G059100' => 'ppe', 'Prupe.7G059400' => 'ppe', 'Psat0s4042g0160' => 'psa', 'Psat1g145920' => 'psa', 'Psat3g072880' => 'psa', 'Psat3g091240' => 'psa', 'Psat5g160000' => 'psa', 'Psat5g301960' => 'psa', 'Psat6g118960' => 'psa', 'PSO063G2211' => 'pso', 'PSO170G2413' => 'pso', 'PSO339G4942' => 'pso', 'PSO384G3818' => 'pso', 'QL01p038035' => 'qlo', 'QL07p000651' => 'qlo', 'QL11p004970' => 'qlo', 'RcHm_v2.0_Chr3g0482581' => 'rch', 'RcHm_v2.0_Chr4g0400761' => 'rch', 'RcHm_v2.0_Chr4g0400781' => 'rch', 'RcHm_v2.0_Chr5g0069141' => 'rch', 'RcHm_v2.0_Chr5g0071761' => 'rch', 'Rhsim01G0002300' => 'rsi', 'Rhsim13G0070200' => 'rsi', 'Sabra06G0035100' => 'sbr', 'Sabra06G0127100' => 'sbr', 'Sabra07G0055200' => 'sbr', 'Sabra16G0058700' => 'sbr', 'Sabra18G0077200' => 'sbr', 'SalBow1G2104' => 'sbo', 'SalBow1G2788' => 'sbo', 'SalBow6G0502' => 'sbo', 'Sc08g0009310' => 'sci', 'Sc13g0001710' => 'sci', 'Sc14g0001340' => 'sci', 'Sc19g0006550' => 'sci', 'Sc25g0005310' => 'sci', 'Sed0001235' => 'sed', 'Sed0006504' => 'sed', 'Sed0007193' => 'sed', 'Sed0008667' => 'sed', 'Sed0011613' => 'sed', 'Sed0019859' => 'sed', 'Sed0023835' => 'sed', 'Sed0025676' => 'sed', 'Sed0027707' => 'sed', 'SEGI_33935' => 'sgi', 'SEGI_38769' => 'sgi', 'SEGI_40686' => 'sgi', 'SGA_v2.0_scaffold104G30255' => 'sas', 'SGA_v2.0_scaffold105G30408' => 'sas', 'SGA_v2.0_scaffold136G35036' => 'sas', 'SGA_v2.0_scaffold139G35426' => 'sas', 'SGA_v2.0_scaffold13G06746' => 'sas', 'SGA_v2.0_scaffold144G35972' => 'sas', 'SGA_v2.0_scaffold15G07485' => 'sas', 'SGA_v2.0_scaffold17G07951' => 'sas', 'SGA_v2.0_scaffold206G41857' => 'sas', 'SGA_v2.0_scaffold377G50307' => 'sas', 'SGA_v2.0_scaffold69G23120' => 'sas', 'SGA_v2.0_scaffold69G23227' => 'sas', 'SGA_v2.0_scaffold736G53538' => 'sas', 'SGA_v2.0_scaffold8G04474' => 'sas', 'SGA_v2.0_scaffold90G27965' => 'sas', 'SHI02881' => 'shi', 'SHI02882' => 'shi', 'SHI02883' => 'shi', 'SHI26322' => 'shi', 'SMO203G0180' => 'smo', 'Solyc01g058210.3' => 'sly', 'Solyc02g021420.3' => 'sly', 'Solyc04g015830.3' => 'sly', 'Solyc05g014056.1' => 'sly', 'Solyc05g014058.1' => 'sly', 'Solyc08g150119.1' => 'sly', 'Solyc09g031950.3' => 'sly', 'Solyc10g079400.3' => 'sly', 'Solyc10g080100.3' => 'sly', 'Solyc12g077623.1' => 'sly', 'Solyc12g077627.1' => 'sly', 'Sopen02g005870' => 'spe', 'Sopen04g007880' => 'spe', 'Sopen10g030040' => 'spe', 'Sopen10g030710' => 'spe', 'Sp4g12470' => 'spa', 'Sp4g24010' => 'spa', 'Sp5g05190' => 'spa', 'Sp6g19040' => 'spa', 'Sp7g28020' => 'spa', 'TAR369G0166' => 'tar', 'TAR369G0581' => 'tar', 'TAR369G1068' => 'tar', 'TAR383G1017' => 'tar', 'TAR623G1412' => 'tar', 'TAR636G1932' => 'tar', 'THA.LOC104800733' => 'tha', 'THA.LOC104803482' => 'tha', 'THA.LOC104803949' => 'tha', 'THA.LOC104817781' => 'tha', 'THA.LOC104818057' => 'tha', 'THA.LOC104824441' => 'tha', 'Thecc.05G152900' => 'tca', 'Thecc.09G179500' => 'tca', 'Thecc.09G302800' => 'tca', 'Thhalv10005772m.g' => 'esa', 'Thhalv10012571m.g' => 'esa', 'Thhalv10016183m.g' => 'esa', 'Thhalv10016199m.g' => 'esa', 'Thhalv10024322m.g' => 'esa', 'TPR.G21182' => 'tpr', 'TPR.G29098' => 'tpr', 'TPR.G3740' => 'tpr', 'TPR.G5400' => 'tpr', 'TPR.G5431' => 'tpr', 'TPR.G9020' => 'tpr', 'TWI34G0770' => 'twi', 'TWI53G0652' => 'twi', 'TWI63G0997' => 'twi', 'TWI74G0895' => 'twi', 'TWI77G0008' => 'twi', 'TWI79G0460' => 'twi', 'unitig_0.g2674' => 'ugi', 'unitig_0.g579' => 'ugi', 'unitig_0.g580' => 'ugi', 'unitig_22.g6040' => 'ugi', 'unitig_46.g18441' => 'ugi', 'unitig_748.g7214' => 'ugi', 'unitig_748.g7234' => 'ugi', 'vmacro02969' => 'vma', 'vmacro07847' => 'vma', 'vmacro12609' => 'vma', 'VMungo0331G1804' => 'vmu', 'VMungo0540G0028' => 'vmu', 'VMungo0540G1823' => 'vmu', 'VMungo0720G1405' => 'vmu', 'VMungo1080G0986' => 'vmu', 'VMungo1215G3077' => 'vmu', 'VMungo1309G1115' => 'vmu', 'VMungo1383G2361' => 'vmu', 'Zm00001eb017330' => 'zma', 'Zm00001eb071670' => 'zma', 'Zm00001eb106360' => 'zma', 'Zm00001eb140890' => 'zma', 'Zm00001eb181810' => 'zma', 'Zm00001eb281890' => 'zma', 'Zm00001eb323250' => 'zma', 'Zm00001eb323260' => 'zma', 'Zm00001eb362860' => 'zma', 'Zm00001eb389350' => 'zma', 'Zm00001eb394440' => 'zma', 'Zm00001eb430400' => 'zma' ) $gf_id = 'HOM05D000942' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000942' ) $data_identifier = 'HOM05D000942' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 17, 'amhyb' => (int) 7, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 20, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 18, 'bol' => (int) 10, 'bra' => (int) 11, 'can' => (int) 4, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 7, 'cbr' => (int) 1, 'ccan' => (int) 9, 'cde' => (int) 6, 'cfa' => (int) 1, 'ccl' => (int) 3, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 3, 'cre' => (int) 2, 'csa' => (int) 5, 'camsi' => (int) 5, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 3, 'egr' => (int) 7, 'fan' => (int) 11, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 3, 'hma' => (int) 10, 'vpl' => (int) 10, 'sun' => (int) 2, 'lal' => (int) 10, 'lja' => (int) 5, 'lonja' => (int) 4, 'lsa' => (int) 24, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 9, 'mco' => (int) 1, 'mdo' => (int) 5, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 8, 'nnu' => (int) 4, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 4, 'qlo' => (int) 3, 'rch' => (int) 5, 'rsi' => (int) 2, 'sbr' => (int) 5, 'sbo' => (int) 3, 'sci' => (int) 5, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 15, 'shi' => (int) 4, 'smo' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 7, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430400' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1